Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Modelling the transmission and impact of Omicron variants of Covid-19 in different ethnicity groups in Aotearoa New Zealand
- KEMP-PIP: A Feature-Fusion Based Approach for Pro-inflammatory Peptide Prediction
- Simulating stochastic population dynamics: The Linear Noise Approximation can capture non-linear phenomena
- Augmenting Molecular Graphs with Geometries via Machine Learning Interatomic Potentials
- Predicting Metabolic Dysfunction-Associated Steatotic Liver Disease using Machine Learning Methods: A Retrospective Cohort Study
- A geometric feature tracking approach for noninvasive patient specific estimation of leaflet strain from 3D images of heart valves
- CryoLVM: Self-supervised Learning from Cryo-EM Density Maps with Large Vision Models
- Topological shape transform for thymus structures
- Targeted T2-FLAIR Dropout Training Improves Robustness of nnU-Net Glioblastoma Segmentation to Missing T2-FLAIR
- Adaptation by Cumulative Selection
- NF-κB transcriptionally enhances p53 accumulation dynamics hampering DNA repair
- Generalized Morphogenesis Theory: A Flow-Inertia Modeling Framework for Cross-Scale Dynamics of Dissipative Structures
- What microbes want: exploring microbial substrate preferences with the Web of Microbes Agent
- Geometric-Evolutionary Deep Learning Decodes the Human GPCR-Metabolome Interactome and Enables Systematic De-Orphanization
- Endocrine-metabolic decoupling drives stress vulnerability in dystrophin deficiency
- Leveraging Twin Information for Inference of Gene Regulatory Networks
- A Fine-Tuned Phosphatidylinositol Profile Contributes to Colonocyte Differentiation and Malignization: Evidence From Integrated Omics
- Flow constraints at infection site shape multiplication-dissemination trade-offs and opposite regulatory programs of Xanthomonas and Ralstonia xylem pathogens
- Multi-Omics Mapping of Human Kidney Reveals Complement-Mediated Cellular Dynamics During Progression of Focal Segmental Glomerulosclerosis
- A versatile method to pattern surfaces within microfluidic devices
- Sub-district spatial heterogeneity in trachoma seroprevalence as populations approach elimination
- Association Between Clostridioides difficile Test Positivity and Incident Colorectal Cancer in a Multisite Hospital-Based Retrospective Cohort Analysis
- Time-to-retraction and likelihood of evidence contamination (VITALITY Extension I): a retrospective cohort analysis
- Alcov2: a National Questionnaire Survey for Understanding the Transmission of SARS-CoV-2 in French Households during First Lockdown
- Automated Model Discovery Based on COVID-19 Epidemiologic Data
- Associations of tattooing with health: a population-based cross-sectional study of ~27,000 US adults
- Integrating measles wastewater and clinical whole-genome sequencing enables high-resolution tracking of virus evolution and transmission
- Measles, Rubella, and Mumps in Mexico: A National Serosurvey Highlighting Reemergence Risks
- Higher exposure to secondhand smoking among adolescents living in Lusaka compared with the rest of Zambia in 2021
- Prevalence and factors associated with high-risk oncogenic human papillomavirus infection among women living with HIV in Kinshasa, the Democratic Republic of the Congo
- Conditional diffusion with locality-aware modal alignment for generating diverse protein conformational ensembles
- Revealing the inherent design principles of the genetic code via an error correcting code representation
- Enhanced drug disease association prediction through multimodal data integration and meta path guided global local feature fusion
- Gompertz growth with a shared carrying capacity optimally simulates primary and metastatic tumor growth dynamics
- Evaluating spatially targeted HIV interventions and harm reduction services among people who inject drugs in a high-burden setting
- Artificial intelligence for microbiology and microbiome research
- We wait for disease to shout—What if we listened when biology whispered?
- What problem do you hope bioengineering or synthetic biology approaches will enable us to tackle in the next decade?
- The hierarchical timescale hypothesis: Functional and structural convergence of biological networks and artificial neural nets
- Generative AI for synthetic biology: Designing biological parts, circuits, and genomes
- Operator-level quantum acceleration of non-logconcave sampling
- Strategy evolution on temporal hypergraphs
- Scaling laws for function diversity and specialization across socioeconomic and biological complex systems
- Leveraging probabilistic forecasts for dengue preparedness and control: The 2024 Dengue Forecasting Sprint in Brazil
- Reply to Cecchi and Palminteri: On the need to model temporal variation in learning rates
- Optimising chemotherapy for advanced high-grade serous ovarian cancer via delay-differential equations
- Age and generation-based model of metastatic cancer: From micrometastases to macrometastases
- The evolutionary success of angiosperms: a foundation of bioenergetic surplus
- Modeling how hunting strategies and pack size shape each other
- Local control of cellular proliferation underlies neuromast regeneration in zebrafish
- A partition method for bounding continuous-time Markov chain models of general reaction network
- Modeling periodic transcriptions in tandem gene systems
- Why does nature force the creation of proteobacteria community in the estuarine ecosystem? - A theoretical model
- Traveling wave formation enables strain coexistence in a spatial model of bacterial cross-feeding
- Bifurcation analysis and fear-induced reactions in non-refuged prey with cooperative hunting among predators: Deterministic and stochastic dynamics
- PON-Del predictor for sequence retaining protein deletions
- Viral evolution during primary infection in immunocompromised hosts
- Hemodynamic impact of acute liver injury on cardiac function: An in silico study via a closed-loop cardiovascular model
- A novel transformer-based platform for the prediction and design of biosynthetic gene clusters for (un)natural products
- Ten simple rules for coordinating a large digital health project: Perspectives from EU and implications for global contexts
- A Random Differential Equation Approach for Modeling the Growth of Microalgae in Photobioreactors
- Pattern Formation in Agent-Based and PDE Models for Evolutionary Games with Payoff-Driven Motion
- Mathematical Modeling of Lesion Pattern Formation in Dendritic Keratitis
- Modeling and Simulation of the Role of Mass Testing in Controlling COVID-19
- Inference of Genetic Networks from Pseudo Time Series of Single-cell Gene Expression Data using Modified Random Forests
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- Cell sorting models in tissue development
- Editorial overview: Mathematical modeling of disease processes
- Think before you fit: Parameter identifiability, sensitivity and uncertainty in systems biology models
- Machine-learned summary statistics for Bayesian inference of systems biology–model parameters: Opportunities and challenges
- Structural identifiability of compartmental models: Recent progress and future directions
- Fractional derivatives in biomathematical models with memory: A critical discussion
- Spectral theory of stochastic gene expression: a Hilbert space framework
- Optimizing insecticide deployment strategies to delay quantitative resistance in mosquito populations
- Autocatalytic cores in the diluted regime: classification and properties
- Infinitesimal homeostasis in mass-action systems