Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Simulation based-inference of epidemiological and phylodynamic models via Neural Posterior Estimation
- A chronic state biostimuli-responsive therapeutic model system: applications to skin tissue repair and regeneration
- Illuminating the Role of Asymmetric Mitochondrial Fission on Beta-Cell Health
- Interconnected axes of phenotypic plasticity drive coordinated cellular behaviour and worse clinical outcomes in breast cancer
- Stochastic Gene Expression under Sequestration: Noise Reduction and Emergent Distributions
- Thermal boundaries and underlying systems biology mechanisms in two waterbloom cyanobacteria
- MODY mutations in transcription factors HNF1A and HNF1B affect the production of interferon signaling proteins: evidence at the proteome level
- Somatic mutations impose an entropic upper bound on human lifespan
- Metabolic imbalance limits fermentation in microbes engineered for high-titer ethanol production
- Cell Trajectory Inference based on Optimal Transport and a mechanistic stochastic gene expression model
- Characterizing the impact of incorporating spatially aggregated human mobility data into infectious disease models
- Genome x Environment analysis of Sudden Unexpected Infant Death unveils etiologic heterogeneity and strong cannabis and genetic disease risks
- Ultra-processed food intake and colorectal cancer risk in the NIH-AARP Diet and Health Study
- Screening Outcomes and Associated Factors in a Follow-up Cervical Cancer Screening among Women Living with HIV, from 2019 to 2024: Evidence from Moshi Municipality
- Incidence of frailty-related fracture among Medicaid beneficiaries living with HIV and cancer: A cohort study
- Expanding optimization ensemble model methods for forecasting seasonal influenza in the U.S.
- Time trend analysis of all paediatric suicides in Sweden 1980-2023: Call for awareness and action
- North Carolina CORonavirus VAriant SEQuencing (CORVASEQ): A surveillance network to monitor an evolving pandemic
- Perceived stress and associated societal, community, interpersonal, and individual factors in adults with post-COVID-19 condition: the PRIME study.
- Characterizing spatiotemporal patterns of case reporting backfill: a case study of COVID-19 reporting in Michigan, 2020-24
- Benchmarking DNA foundation models for genomic and genetic tasks
- Discovery of a bifunctional PKMYT1-targeting PROTAC empowered by AI-generation
- Identification of potential molecular targets of rhaponticin in the treatment of periodontitis using bioinformatics tools
- Assessment of computational methods in predicting TCR–epitope binding recognition
- Computational modelling reveals novel insights into GnRH receptor activation and binding dynamics
- Metabolic network analysis of Crohn’s disease reveals sex- and age-specific cellular phenotypes
- Piscis: A loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learning
- Lighting up hidden microbial enzyme diversity and functional opportunities from fermented foods
- Systematic benchmarking of mass spectrometry-based antibody sequencing reveals methodological biases
- An adversarial scheme for integrating multi-modal data on protein function
- Mechanisms of reentry arrhythmia termination with ephaptic coupling and gap junctional coupling
- Drug mode of action and resource constraints modulate antimicrobial resistance evolution
- Fast approximate Bayesian inference of HIV indicators using PCA adaptive Gauss-Hermite quadrature
- Integrating community level transmission geographical networks into a dynamical system for better epidemic control
- Reducing size bias in epidemic network modelling
- Exploring the role of osteoblast-lineage cells in the evolutionary dynamics of acute myeloid leukemia through a stochastic differential equation model
- A phenotype-structured mathematical model for the influence of hypoxia on oncolytic virotherapy
- Do “soft” interventions matter more than vaccination? Rabies as an example
- Modeling covalently closed circular DNA dynamics in assessing chronic hepatitis B prognosis
- The impact of acid-base changes on the stochastic dynamics of phytoplankton growth under global warming
- Multiscale modelling shows how cell-ECM interactions impact ECM fibre alignment and cell detachment
- Candidate correlates of protection in the HVTN505 HIV-1 vaccine efficacy trial identified by positive-unlabeled learning
- Multi-scale modelling of location- and frequency-dependent synaptic plasticity induced by repetitive magnetic stimulation in the dendrites of pyramidal neurons
- T-shaped alignments integrating HIV-1 near full-length genome and partial pol sequences can improve phylogenetic inference of transmission clusters
- Linking multiple serological assays to infer dengue virus infections from paired samples using mixture models
- Routing Functions for Parameter Space Decomposition to Describe Stability Landscapes of Ecological Models
- Understanding Multistationarity of Fully Open Reaction Networks
- Correction to: The Implications of Host–pathogen Co-evolutionary Outcomes on Macro-epidemics based on a Combined-host Strategy
- A bibliometric study on mathematical oncology: interdisciplinarity, internationality, collaboration and trending topics
- Strategic Control of Drug-Resistant HIV: Multi-Strain Modeling with Diagnosis, Adherence, and Treatment Switching
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- Editorial overview: Mathematical modeling of disease processes
- Think before you fit: Parameter identifiability, sensitivity and uncertainty in systems biology models
- Machine-learned summary statistics for Bayesian inference of systems biology–model parameters: Opportunities and challenges
- Structural identifiability of compartmental models: Recent progress and future directions
- Editorial overview: ‘Identifiability, estimation, and uncertainty in mathematical modeling’
- On the reduction of stochastic chemical reaction networks
- Dynamical mechanisms of inflammatory spatial distribution and its association with recurrence in Crohn’s disease
- Analytical Insights into Ephaptic Coupling and Its Effect on Conduction Velocity
- The importance of the individual’s micro-environment in drug consumption
- Multistability of small zero-one reaction networks